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1.
Front Med (Lausanne) ; 10: 1233220, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37564037

RESUMEN

Introduction: Leprosy reactions (LR) are severe episodes of intense activation of the host inflammatory response of uncertain etiology, today the leading cause of permanent nerve damage in leprosy patients. Several genetic and non-genetic risk factors for LR have been described; however, there are limited attempts to combine this information to estimate the risk of a leprosy patient developing LR. Here we present an artificial intelligence (AI)-based system that can assess LR risk using clinical, demographic, and genetic data. Methods: The study includes four datasets from different regions of Brazil, totalizing 1,450 leprosy patients followed prospectively for at least 2 years to assess the occurrence of LR. Data mining using WEKA software was performed following a two-step protocol to select the variables included in the AI system, based on Bayesian Networks, and developed using the NETICA software. Results: Analysis of the complete database resulted in a system able to estimate LR risk with 82.7% accuracy, 79.3% sensitivity, and 86.2% specificity. When using only databases for which host genetic information associated with LR was included, the performance increased to 87.7% accuracy, 85.7% sensitivity, and 89.4% specificity. Conclusion: We produced an easy-to-use, online, free-access system that identifies leprosy patients at risk of developing LR. Risk assessment of LR for individual patients may detect candidates for close monitoring, with a potentially positive impact on the prevention of permanent disabilities, the quality of life of the patients, and upon leprosy control programs.

2.
Stud Health Technol Inform ; 302: 172-176, 2023 May 18.
Artículo en Inglés | MEDLINE | ID: mdl-37203641

RESUMEN

Stroke is one of the leading causes of death and impairments worldwide. After hospital discharge, it is necessary to monitor these patients during their recovery. This research addresses the implementation of a mobile app, entitled 'Quer N0 AVC', to improve the quality of stroke patient care in Joinville, Brazil. The study method was divided into two parts. The adaptation phase included all the necessary information in the app for monitoring stroke patients. The implementation phase aimed to prepare a routine for the Quer mobile app installation. One of the questionnaires collected data from 42 patients and identified that before hospital admission 29% of them did not have medical appointments, 36% had one or two appointments, 11% had three appointments, and 24% had four or more appointments. This research portrayed adaptation feasibility and the implementation of a cell phone app for following up on stroke patients.


Asunto(s)
Teléfono Celular , Aplicaciones Móviles , Humanos , Hospitalización , Alta del Paciente , Aceptación de la Atención de Salud
3.
Stud Health Technol Inform ; 290: 321-325, 2022 Jun 06.
Artículo en Inglés | MEDLINE | ID: mdl-35673027

RESUMEN

Decision-making in the field of healthcare is a very complex activity. Several tools have been developed to support the decision-making process. DMN, a modeling technique focused on decisions, is among these and has been gaining prominence in both, literature and business, as has the multi-criteria method PROMETHEE II that helps decision-makers with multi-criteria in analyses. Thus, this research targets combining these two techniques and analyzing the decision support that these two tools afford together. The diagnostic stage of stroke patients was used to perform this work. The research demonstrated that this proposal can drive major gains in efficiency and assertiveness in decision-making in time-sensitive hospital processes. After all, there is a noticeable dearth of hospitals with specialized teams as well as a shortfall of adequate infrastructure for this treatment.


Asunto(s)
Accidente Cerebrovascular , Toma de Decisiones , Humanos , Accidente Cerebrovascular/diagnóstico , Accidente Cerebrovascular/terapia
4.
J Biomed Semantics ; 13(1): 13, 2022 05 08.
Artículo en Inglés | MEDLINE | ID: mdl-35527259

RESUMEN

BACKGROUND: The high volume of research focusing on extracting patient information from electronic health records (EHRs) has led to an increase in the demand for annotated corpora, which are a precious resource for both the development and evaluation of natural language processing (NLP) algorithms. The absence of a multipurpose clinical corpus outside the scope of the English language, especially in Brazilian Portuguese, is glaring and severely impacts scientific progress in the biomedical NLP field. METHODS: In this study, a semantically annotated corpus was developed using clinical text from multiple medical specialties, document types, and institutions. In addition, we present, (1) a survey listing common aspects, differences, and lessons learned from previous research, (2) a fine-grained annotation schema that can be replicated to guide other annotation initiatives, (3) a web-based annotation tool focusing on an annotation suggestion feature, and (4) both intrinsic and extrinsic evaluation of the annotations. RESULTS: This study resulted in SemClinBr, a corpus that has 1000 clinical notes, labeled with 65,117 entities and 11,263 relations. In addition, both negation cues and medical abbreviation dictionaries were generated from the annotations. The average annotator agreement score varied from 0.71 (applying strict match) to 0.92 (considering a relaxed match) while accepting partial overlaps and hierarchically related semantic types. The extrinsic evaluation, when applying the corpus to two downstream NLP tasks, demonstrated the reliability and usefulness of annotations, with the systems achieving results that were consistent with the agreement scores. CONCLUSION: The SemClinBr corpus and other resources produced in this work can support clinical NLP studies, providing a common development and evaluation resource for the research community, boosting the utilization of EHRs in both clinical practice and biomedical research. To the best of our knowledge, SemClinBr is the first available Portuguese clinical corpus.


Asunto(s)
Medicina , Procesamiento de Lenguaje Natural , Registros Electrónicos de Salud , Humanos , Portugal , Reproducibilidad de los Resultados
5.
Stud Health Technol Inform ; 294: 48-52, 2022 May 25.
Artículo en Inglés | MEDLINE | ID: mdl-35612014

RESUMEN

Medical assistance to stroke patients must start as early as possible; however, several changes have impacted healthcare services during the Covid-19 pandemic. This research aimed to identify the stroke onset-to-door time during the Covid-19 pandemic considering the different paths a patient can take until receiving specialized care. It is a retrospective study based on process mining (PM) techniques applied to 221 electronic healthcare records of stroke patients during the pandemic. The results are two process models representing the patient's path and performance, from the onset of the first symptoms to admission to specialized care. PM techniques have discovered the patient journey in providing fast stroke assistance.


Asunto(s)
COVID-19 , Accidente Cerebrovascular , COVID-19/epidemiología , Humanos , Pandemias , Estudios Retrospectivos , Accidente Cerebrovascular/diagnóstico , Accidente Cerebrovascular/terapia , Terapia Trombolítica , Tiempo de Tratamiento
6.
Appl Clin Inform ; 12(2): 340-347, 2021 03.
Artículo en Inglés | MEDLINE | ID: mdl-33853142

RESUMEN

OBJECTIVE: The study aimed to represent the content of nursing diagnosis and interventions in the openEHR standard. METHODS: This is a developmental study with the models developed according to ISO 18104: 2014. The Ocean Archetype Editor tool from the openEHR Foundation was used. RESULTS: Two archetypes were created; one to represent the nursing diagnosis concept and the other the nursing intervention concept. Existing archetypes available in the Clinical Knowledge Manager were reused in modeling. CONCLUSION: The representation of nursing diagnosis and interventions based on the openEHR standard contributes to representing nursing care phenomena and needs in health information systems.


Asunto(s)
Registros Electrónicos de Salud
7.
Braz. arch. biol. technol ; 64(spe): e21210142, 2021. tab, graf
Artículo en Inglés | LILACS-Express | LILACS | ID: biblio-1350282

RESUMEN

Abstract Sepsis is a systematic response to an infectious disease, being a concerning factor because of the increase in the mortality ratio for every delayed hour in the identification and start of patient's treatment. Studies that aim to identify sepsis early are valuable for the healthcare domain. Further, studies that propose machine learning-based models to identify sepsis risk are scarce for the Brazilian scenario. Hence, we propose the early identification of sepsis considering data from a Brazilian hospital. We developed a temporal series based on LSTM to predict sepsis in patients considering a three-day timestep. The patients were selected using both criteria, ICD-10, and qSOFA, where we supplemented qSOFA with the additional identification of words referring to infections in the clinical texts. Additionally, we tested a Random Forest classifier to classify patients with sepsis with a single timestep before the sepsis event, evaluating the most relevant features. We achieved an accuracy of 0.907, a sensitivity of 0.912, and a specificity of 0.971 when considering a three-day timestep with LSTM. The Random Forest classifier achieved an accuracy of 0.971, a sensitivity of 0.611, and a specificity of 0.998. The features age, blood glucose, systolic blood pressure, diastolic blood pressure, heart rate, respiratory rate, and admission days had the most influence over the algorithm classification, with age being the most relevant feature. We achieved satisfactory results compared with the literature considering a scenario of spaced measures and a high amount of missing data.

8.
J Biomed Inform ; 111: 103582, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-33010426

RESUMEN

OBJECTIVE: To describe a method of analysis for understanding the health care process, enriched with information on the clinical and profile characteristics of the patients. To apply the proposed technique to analyze an ischemic stroke dataset. MATERIALS AND METHODS: We analyzed 4,830 electronic health records (EHRs) from patients with ischemic stroke (2010-2017), containing information about events realized during treatment and clinical and profile information of the patients. The proposed method combined process mining techniques with data analysis, grouping the data by primary care units (PCU - units responsible for the primary care of patients residing in a geographical area). RESULTS: A novel method, named process, data, and management (PDM) analysis method was used for ischemic stroke data and it provided the following outcomes: health care process for patients with ischemic stroke with time statistics; analysis of potential factors for slow hospital admission indicating an increase in the time to hospital admission of 3.4 h (mean value) for patients with an origin at the urgent care center (UCC) - 30% of patients; analysis of PCUs with distinct secondary stroke rates indicating that the social class of patients is the main difference between them; and the visualization of risk factors (before the stroke) by the PCU to inform the health manager about the potential of prevention. DISCUSSION: PDM analysis describes a step-by-step method for combining process analysis with data analysis considering a management focus. The results obtained on the stroke context can support the definition of more refined action plans by the health manager, improving the stroke health care process and preventing new events. CONCLUSION: When a patient is diagnosed with ischemic stroke, immediate treatment is needed. Moreover, it is possible to prevent new events to some degree by monitoring and treating risk factors. PDM analysis provides an overview of the health care process with time, combining elements that affect the treatment flow and factors, which can indicate a potential for preventing new events. We also can apply PDM analysis in different scenarios, when there is information about activities from treatment flow and other characteristics related to the treatment or the prevention of the analyzed disease. The management focus of the results aids in the formulation of service policies, action plans, and resource allocation.


Asunto(s)
Isquemia Encefálica , Accidente Cerebrovascular Isquémico , Accidente Cerebrovascular , Isquemia Encefálica/terapia , Registros Electrónicos de Salud , Humanos , Factores de Riesgo , Accidente Cerebrovascular/epidemiología , Accidente Cerebrovascular/terapia
9.
Rev Esc Enferm USP ; 54: e303569, 2020.
Artículo en Portugués, Inglés | MEDLINE | ID: mdl-32696939

RESUMEN

This theoretical and reflective study aimed to assess the contribution of the ISO/TR 12300:2016 document for the mapping of nursing terminology. The referred document and related articles were used as an empirical framework. The study analyzed the content of the document, highlighting cardinality and equivalence principles. The standard presents conceptual and operational basis for mapping, with cardinality and equivalence as the support for the categorization of cross-terminology mapping in the area of nursing. Cardinality verifies candidate target terms to represent the source term, while the equivalence degree scale checks semantic correspondence. Among the principles included in the ISO/TR 12300:2016, cardinality and equivalence contribute to the accurate representation of the results of the cross-terminology mapping process and its use should decrease inconsistencies.


Asunto(s)
Terminología Normalizada de Enfermería , Interoperabilidad de la Información en Salud , Humanos , Informática Aplicada a la Enfermería , Semántica , Vocabulario Controlado
10.
JMIR Nurs ; 3(1): e18501, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-34345784

RESUMEN

BACKGROUND: Cross-mapping establishes equivalence between terms from different terminology systems, which is useful for interoperability, updated terminological versions, and reuse of terms. Due to the number of terms to be mapped, this work can be extensive, tedious, and thorough, and it is susceptible to errors; this can be minimized by automated processes, which use computational tools. OBJECTIVE: The aim of this study was to compare the results of manual and automated term mapping processes. METHODS: In this descriptive, quantitative study, we used the results of two mapping processes as an empirical basis: manual, which used 2638 terms of nurses' records from a university hospital in southern Brazil and the International Classification for Nursing Practice (ICNP); and automated, which used the same university hospital terms and the primitive terms of the ICNP through MappICNP, an algorithm based on rules of natural language processing. The two processes were compared via equality and exclusivity assessments of new terms of the automated process and of candidate terms. RESULTS: The automated process mapped 569/2638 (21.56%) of the source bank's terms as identical, and the manual process mapped 650/2638 (24.63%) as identical. Regarding new terms, the automated process mapped 1031/2638 (39.08%) of the source bank's terms as new, while the manual process mapped 1251 (47.42%). In particular, manual mapping identified 101/2638 (3.82%) terms as identical and 429 (16.26%) as new, whereas the automated process identified 20 (0.75%) terms as identical and 209 (7.92%) as new. Of the 209 terms mapped as new by the automated process, it was possible to establish an equivalence with ICNP terms in 48 (23.0%) cases. An analysis of the candidate terms offered by the automated process to the 429 new terms mapped exclusively by the manual process resulted in 100 (23.3%) candidates that had a semantic relationship with the source term. CONCLUSIONS: The automated and manual processes map identical and new terms in similar ways and can be considered complementary. Direct identification of identical terms and the offering of candidate terms through the automated process facilitate and enhance the results of the mapping; confirmation of the precision of the automated mapping requires further analysis by researchers.

11.
Rev. Esc. Enferm. USP ; 54: e303569, 2020. tab
Artículo en Inglés | BDENF - Enfermería, LILACS | ID: biblio-1115155

RESUMEN

Abstract This theoretical and reflective study aimed to assess the contribution of the ISO/TR 12300:2016 document for the mapping of nursing terminology. The referred document and related articles were used as an empirical framework. The study analyzed the content of the document, highlighting cardinality and equivalence principles. The standard presents conceptual and operational basis for mapping, with cardinality and equivalence as the support for the categorization of cross-terminology mapping in the area of nursing. Cardinality verifies candidate target terms to represent the source term, while the equivalence degree scale checks semantic correspondence. Among the principles included in the ISO/TR 12300:2016, cardinality and equivalence contribute to the accurate representation of the results of the cross-terminology mapping process and its use should decrease inconsistencies.


Resumen Este estudio teórico reflexivo tiene como fin reflexionar acerca del aporte de la norma ISO/TR 12300:2016 para el mapeo de terminologías en el área de enfermería. Fueron utilizados como base empírica la mencionada norma y artículos relacionados, analizando el contenido de la norma y destacando los principios de cardinalidad y equivalencia. La norma presenta bases conceptuales y operativas para el mapeo, con la cardinalidad y la equivalencia, anclando la categorización de los resultados de los mapeos entre terminologías en el área de enfermería. La cardinalidad verifica los términos meta candidatos para representar el término fuente, mientras que la escala de grado de equivalencia verifica la correspondencia semántica. Entre los principios incluidos en la ISO/TR 12300:2016, la cardinalidad y la equivalencia contribuyen a la representación precisa de los resultados del proceso de mapeo cruzado y su empleo debe de reducir inconsistencias.


Resumo Este estudo teórico-reflexivo teve como objetivo refletir sobre a contribuição da norma ISO/TR 12300:2016 para mapeamento de terminologias na área de enfermagem. Foram utilizados como base empírica a referida norma e artigos relacionados, analisando o conteúdo da norma e destacando os princípios de cardinalidade e equivalência. A norma apresenta bases conceituais e operacionais para o mapeamento, com a cardinalidade e a equivalência, ancorando a categorização dos resultados dos mapeamentos entre terminologias na área de enfermagem. A cardinalidade verifica os termos-alvo candidatos para representar o termo-fonte, enquanto a escala de grau de equivalência verifica a correspondência semântica. Entre os princípios inclusos na ISO/TR 12300:2016, a cardinalidade e a equivalência contribuem para a representação precisa dos resultados do processo de mapeamento cruzado e seu uso deve diminuir inconsistências.


Asunto(s)
Vocabulario Controlado , Terminología Normalizada de Enfermería , Interoperabilidad de la Información en Salud
12.
Stud Health Technol Inform ; 264: 123-127, 2019 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-31437898

RESUMEN

In this paper, we trained a set of Portuguese clinical word embedding models of different granularities from multi-specialty and multi-institutional clinical narrative datasets. Then, we assessed their impact on a downstream biomedical NLP task of Urinary Tract Infection disease identification. Additionally, we intrinsically evaluated our main model using an adapted version of Bio-SimLex for the Portuguese language. Our empirical results showed that the larger, coarse-grained model achieved a slightly better outcome when compared with the small, fine-grained model in the proposed task. Moreover, we obtained satisfactory results with Bio-SimLex intrinsic evaluation.


Asunto(s)
Aprendizaje Automático , Procesamiento de Lenguaje Natural , Lenguaje , Narración , Portugal
13.
Stud Health Technol Inform ; 264: 1552-1553, 2019 Aug 21.
Artículo en Inglés | MEDLINE | ID: mdl-31438227

RESUMEN

This study describes MappICNP, an automatic method for mapping between Brazilian Portuguese clinical narratives in free text and International Classification for Nursing Practice (ICNP) concepts. It's composed of six natural language processing rules, related to terms comparison. A set of 2,638 terms extracted from hospitals nursing notes was mapped. MappICNP helps to map 1,607 terms, 113 less than a manual approach. The results demostrate its advantages in minimizing the time spent and reducing the scope of analysis through candidate terms of ICNP.


Asunto(s)
Terminología Normalizada de Enfermería , Brasil , Procesamiento de Lenguaje Natural , Vocabulario Controlado
15.
J. vasc. bras ; 17(1): f:10-l:18, jan.-mar. 2018. tab
Artículo en Portugués | LILACS | ID: biblio-904884

RESUMEN

Contexto: A amputação e a desarticulação objetivam melhorar a saúde de um indivíduo, mas esses tratamentos apresentam taxas significantes de mortalidade que variam de acordo com os fatores relacionados. Objetivo: Identificar as associações entre os determinantes da mortalidade pós-operatória da amputação. Métodos: Estudo do tipo caso-controle (óbito versus não óbito) em que foi adotada a descoberta de regras de associação (abordagem da mineração de dados) e métricas epidemiológicas sobre 173 registros de pacientes amputados em um hospital público de Santa Catarina em 2014. Resultados: Os principais determinantes foram: idade > 60 anos [ odds ratio (OR) = 3,0], sexo feminino (OR = 2,0), baixa escolaridade, hipertensão (OR = 3,0), diabetes (OR = 1,6) e tabagismo (OR = 1,8). Dos pacientes com idade entre 60 a 69 anos (38%), 87,9% evoluíram para alta, estando o óbito associado a doença vascular periférica. Quando a idade foi > 70 anos, embolia e trombose de artérias dos membros inferiores foram o fator de exceção (óbito). As patologias com maior associação ao óbito foram doença vascular (47,0%), diabetes (29,4%), doença cardíaca (razão de risco = 11,4), doença renal (OR = 10,4) e doença pulmonar (OR = 5,2). As cirurgias proximais estiveram mais associadas ao óbito do que as distais. Entre os pacientes que foram a óbito, 76,0% foram submetidos a raquianestesia e 24,0% a anestesia geral. Conclusão: A mineração de dados permitiu identificar as associações vinculadas ao óbito entre as diferentes variáveis e diagnósticos, como por exemplo, entre idade > 70 anos e diagnóstico de embolia e trombose de artérias dos membros inferiores


Background: The objective of amputation and disarticulation is to improve health. However, these treatments are associated with significant mortality rates that vary in relation to risk factors. Objective: To identify associations between determinants of postoperative mortality after amputation surgery. Methods: Case-control study (death vs. no death) considering data from 173 patients who underwent amputation surgery at a public hospital in Santa Catarina state, Brazil. These data were analyzed using a data mining approach to discover association rules and epidemiologic association metrics. Results: The main determinants were age > 60 years (odds ratio (OR) = 3.0), female sex (OR = 2.0), low education, hypertension (OR = 3.0), diabetes (OR = 1.6), and smoking (OR = 1.8). Among patients aged 60-69 years, 87.9% survived to discharge from hospital. The exceptions occurred when patients in this age range had peripheral vascular disease. The same was true when age was > 70 years, among whom diagnoses of embolism and thrombosis of arteries of the lower extremities were the exception factors (associated with death). The most common pathologies associated with death were vascular disease (47.0%) and diabetes (29.4%), heart disease (relative risk = 11.4), renal disease (OR = 10.4), and lung disease (OR = 5.2). Proximal surgeries were more strongly associated with death than distal ones. Among the deaths, 76.0% had been given spinal anesthesia and 24.0% general anesthesia. Conclusion: Data mining enabled identification of associations between death and a variety of different variables and diagnostic hypotheses; for example, age > 70 years and diagnosis of embolism and thrombosis of arteries of the lower extremities


Asunto(s)
Humanos , Masculino , Femenino , Persona de Mediana Edad , Anciano , Minería de Datos/métodos , Amputación Quirúrgica/métodos , Tabaquismo , Factores Sexuales , Estudios Prospectivos , Factores de Riesgo , Mortalidad , Extremidad Inferior , Diabetes Mellitus/diagnóstico , Escolaridad , Hipertensión/complicaciones
16.
Stud Health Technol Inform ; 245: 1322, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29295403

RESUMEN

Studies describing Computer-Interpretable Clinical Guidelines (CIG) with temporal constrains (TC) generally have not addressed issues related to their integration into Electronic Health Record (EHR) systems. This study aimed to represent TCs contained in clinical guidelines by applying archetypes and Guideline Definition Language (GDL) to incorporate decision support into EHRs. An example of each TC class in the clinical guideline for management of Atrial Fibrillation was represented using archetypes and GDL.


Asunto(s)
Fibrilación Atrial/terapia , Registros Electrónicos de Salud , Humanos , Guías de Práctica Clínica como Asunto
17.
J. health inform ; 8(2): 41-48, abr.-jun. 2016. tab, graf
Artículo en Portugués | LILACS | ID: biblio-1094

RESUMEN

Objetivos: Definir o que é a avaliação de SIS, descrevendo os aspectos considerados e os métodos aplicados. Método: Revisão sistemática na base de dados PubMed no período de janeiro de 2004 a junho de 2014. Resultados: A maioria dos estudos avaliou os aspectos da usabilidade, eficácia e qualidade da informação. Em 29% dos estudos foi encontrada aplicação de métodos combinados com: satisfação e aceitação do usuário; questionários; usabilidade; e entrevista com o grupo. Avaliação da funcionalidade; do impacto; usabilidade e desempenho clínico/diagnóstico são utilizados de forma isolada. Conclusão: É fundamental ter bem claro o que será avaliado no SIS, sendo essencial conhecer os aspectos envolvidos, os métodos existentes e como são aplicados.


Objectives: To define what is the assessment of HIS, describing the aspects considered and the methods applied. Methods: Systematic review in PubMed database from January 2004 to June 2014. Results: Most studies evaluating aspects of usability, efficacy and quality of information. In 29% of studies were applied methods together with: satisfaction and user acceptance; questionnaires; usability; and interview with the group. Reviewed functionality; impact; usability and clinical/diagnostic performance were generally used separated. Conclusion: It is essential to have clear what it will be evaluated in the SIS, and to know the aspects involved, the existing methods and how they are applied.


Objetivos: Definir qué es la evaluación del SIS, describir los aspectos considerados y los métodos aplicados. Métodos: Revisión sistemática de la base de datos PubMed de enero 2004 a junio 2014. Resultados: La mayoría de los estudios evaluaron los aspectos de usabilidad, la eficacia y la calidad de la información. En 29% de los estudios se encontró la aplicación de métodos combinados con: satisfacción y aceptación de los usuarios; cuestionarios; facilidad de uso; y una entrevista con el grupo. La evaluación de  funcionalidad; impacto; usabilidad y el rendimiento clínico / diagnóstico se utilizan de forma aislada. Conclusión: Es esencial tener claro los objetivos de la evaluación del SIS, además es esencial conocer los aspectos involucrados, los métodos existentes y cómo éstos son aplicados.


Asunto(s)
Evaluación en Salud/métodos , Base de Datos , Sistemas de Información en Salud
18.
J. health inform ; 8(supl.I): 1031-1040, 2016. ilus
Artículo en Portugués | LILACS | ID: biblio-906773

RESUMEN

A utilização de técnicas de Processamento de Linguagem Natural (PLN) em textos clínicos é amplamente dependente de grandes quantidades de dados textuais anotados, denominados corpus ou padrão ouro. Sendo essenciais para a modelagem da linguagem durante a fase de treinamento de diversos algoritmos de PLN. Porém, para a criação de um padrão ouro é necessário um extenso e custoso trabalho manual de anotação, que demanda um grande esforço de especialistas. OBJETIVO: Realizar uma revisão da literatura, visando o estudo de metodologias e ferramentas utilizadas em procedimentos de anotação de textos. MÉTODO: Levantamento em bases científicas referentes à elaboração de corpus morfológicos, sintáticos e morfossintáticos foi realizado, analisando 32 estudos de anotação e mais 12 ferramentas. RESULTADOS: Foram levantados os principais aspectos nos processos de anotação, bem como realizada uma avaliação dentre critérios pré-definidos de cada das ferramentas de suporte encontradas.


The use of natural language processing techniques (NLP) in clinical texts is dependent on large amounts of annotated text data, called corpus or gold standard. Are essential for the modelling language during the training phase of NLP algorithms. However, for the creation of a gold standard is required extensive and costly manual annotation task, that demands a great deal of experts. OBJECTIVES: To review the literature to identify methodologies and tools applied to text annotation. METHODS: Scientifics databases search regarding the development of morphological, syntactic and morphosyntactic corpus was performed by analyzing 32 annotation studies and 12 tools. RESULTS: Main aspects of the annotation process description, as well as an assessment from pre-defined criteria for each one of the annotation tools identified.


Asunto(s)
Humanos , Procesamiento de Lenguaje Natural , Programas Informáticos , Almacenamiento y Recuperación de la Información , Congresos como Asunto
19.
J. health inform ; 8(supl.I): 219-226, 2016. ilus
Artículo en Portugués | LILACS | ID: biblio-906250

RESUMEN

As Restrições Temporais contidas em diretrizes clínicas representam uma parte fundamental de sua descrição relacionada principalmente aos algoritmos terapêuticos, porém, ainda existe a dificuldade de representar as Restrições Temporais complexas e integrá-las em um Registro Eletrônico de Saúde interoperável. Objetivo: explorar a representação de Restrições Temporais baseando-se em arquétipos da openEHR e Guideline Definition Language. MÉTODO: identificação dos principais tipos de Restrições Temporais existentes, identificação de Restrições Temporais nas diretrizes clínicas de doença renal crônica, fibrilação atrial e mieloma múltiplo, e sua representação em arquétipos e Guideline Definition Language. RESULTADOS: tipos de Restrições Temporais encontrados nas diretrizes clínicas: quantitativo e eventos de repetição (doença renal crônica), quantitativo (fibrilação atrial), quantitativo e qualitativo (mieloma múltiplo). Modelados 4 arquétipos e reutilizado 1 arquétipo da openEHR. CONCLUSÃO: Foi possível representar as Restrições Temporais contidas em diretrizes clínicas em suas diversas classes de eventos baseando-se em arquétipos e Guideline Definition Language da openEHR.


The temporal Constraints contained in clinical practice guidelines represent a fundamental part of their description mainly related to therapeutic algorithms, however, there is still the difficulty of representing the complexTemporal Constraints and integrate them into an Electronic Registration Health Interoperable. OBJECTIVES: To explore the representation of Temporal Constraints based on the openEHR archetypes and Guideline Definition Language. METHODS: identification of the main types of Temporal constraints, identification of Temporal Constraints on clinical guidelines for Chronic Kidney Disease, Atrial Fibrillation and Multiple Myeloma, and its representation in archetypesand Guideline Definition Language. RESULTS: Temporal Constraints types found in practice guidelines in the study:quantitative and repeating events (chronic kidney disease), quantitative (atrial fibrillation), qualitative and quantitative(multiple myeloma). Four archetypes were modeled and 1 archetype openEHR reused. CONCLUSION: It was possible torepresent Temporal Constraints contained in clinical practice guidelines in its various event classes based on archetypes and Guideline Definition Language of openEHR.


Asunto(s)
Humanos , Sistemas de Apoyo a Decisiones Clínicas , Sistemas de Información en Salud , Congresos como Asunto
20.
J. health inform ; 8(supl.I): 277-286, 2016. ilus, tab
Artículo en Portugués | LILACS | ID: biblio-906272

RESUMEN

Os sistemas de apoio a decisão em saúde (SAD) devem ser avaliados abordando vários aspectos, porém definir a metodologia para esta tarefa requer conhecimento dos métodos disponíveis e de como utilizá-los. OBJETIVO: Identificar as principais metodologias para avaliação de SAD, indicando como aplicá-las. MÉTODO: Revisão sistemática no PubMed(maio de 2006 a maio de 2016), incluindo descrição dos principais métodos identificados. Resultados: No aspecto usabilidade,a tendência são metodologias que avaliam a sequência de tarefas, seguidos pelas entrevistas, think-out-loud sessions, questionários e vídeos. A metodologia predominante para avaliação da eficácia foi o ensaio controlado randomizado;na eficiência, a análise de indicadores; na confiabilidade, a comparação dos dados; e na efetividade, as entrevistas, questionários, análise de documentos e estudo de coorte. CONCLUSÃO: Para assegurar a qualidade da avaliação dos SADs propõem-se a integração de diferentes métodos de avaliação abordando diversos aspectos.


The clinical decision-support system (CDSS) should be evaluated considering different aspects, but to define the methodology to this task is necessary to know the available methods and how to use them. Objective: Identify the main methodologies for CDSS evaluation, indicating how to apply them. METHODS: Systematic review on PubMed (May 2006to May 2016), including descriptions of the main methods. RESULTS: Considering the usability aspect, trends are methods to evaluate tasks' sequence, followed by interviews, think-out-loud sessions, questionnaire and videos. Randomized controlledtrial is the major method related to efficacy evaluation; to efficiency, indicator´s analysis; data comparison to reability aspect; and in effectiveness, interview, questionnaires, document analysis and cohort study. CONCLUSION: To ensure CDSS evaluation quality, the proposal is to integrate several evaluation methods integrating deferent aspects.


Asunto(s)
Humanos , Evaluación en Salud , Sistemas de Apoyo a Decisiones Clínicas , Congresos como Asunto
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